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Variant report
Variant
rs60305182
Chromosome Location
chr7:107306267-107306268
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:1)
CpG islands (count:0)
Chromatin interactive region (count:4)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
USF1
chr7:107306173-107306342
SK-N-SH_RA
brain:
n/a
n/a
No data
(count:4 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr7:107298181..107301670-chr7:107306129..107310342,3
K562
blood:
2
chr7:107302999..107305030-chr7:107306145..107307910,2
K562
blood:
3
chr7:107305420..107307401-chr7:107310674..107312739,2
K562
blood:
4
chr7:107301875..107304614-chr7:107305016..107308874,4
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
SLC26A4-AS1
TF binding region
ENSG00000091137
Chromatin interaction
ENSG00000233705
Chromatin interaction
Extended variants information (count: 3 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:2)
rs_ID
r
2
[population]
rs3801951
1.00[AMR][1000 genomes]
rs72494494
1.00[AMR][1000 genomes]
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv1033979
chr7:107003734-107877761
Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
62 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links