Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16987770	1.00[CEU][hapmap]
rs16987821	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2000136	1.00[JPT][hapmap]
rs2211284	1.00[JPT][hapmap]
rs2867652	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2867653	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4516501	0.82[ASN][1000 genomes]
rs4812674	0.89[ASN][1000 genomes]
rs4812676	1.00[JPT][hapmap]
rs4812677	1.00[JPT][hapmap]
rs6016965	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6016969	0.90[YRI][hapmap]
rs6073000	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6103176	1.00[JPT][hapmap]
rs73106034	0.89[ASN][1000 genomes]
rs73106039	0.89[ASN][1000 genomes]
rs73106041	0.89[ASN][1000 genomes]
rs869887	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs947201	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs947202	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs947203	1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063450	chr20:41409901-41880620	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1060690	chr20:41413369-41851935	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1066088	chr20:41417205-42060036	Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv2751914	chr20:41744586-41890453	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41753600-41763800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr20:41754200-41759400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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