Variant report

Variant	rs60313520
Chromosome Location	chr1:183967279-183967280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:183966025..183968649-chr1:183970110..183972411,2	MCF-7	breast:
2	chr1:183961368..183963694-chr1:183965617..183967704,2	MCF-7	breast:
3	chr1:183966449..183970742-chr1:183981274..183983933,4	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59041291	1.00[AFR][1000 genomes]
rs6689337	1.00[AFR][1000 genomes]
rs74130494	1.00[AFR][1000 genomes]
rs74130983	1.00[AFR][1000 genomes]
rs74130984	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv533206	chr1:183861204-184091272	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv872583	chr1:183955574-184015663	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:183955000-183971200	Weak transcription	Right Atrium	heart
2	chr1:183958600-183974200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:183958800-183971000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:183961400-183970800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:183963000-183969400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:183964200-183967600	Enhancers	Brain Hippocampus Middle	brain
7	chr1:183964600-183967600	Enhancers	Fetal Heart	heart
8	chr1:183965200-183967800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr1:183965600-183967400	Enhancers	HepG2	liver
10	chr1:183965800-183971200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:183965800-183971200	Weak transcription	Left Ventricle	heart
12	chr1:183966000-183971000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:183966000-183971000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:183966000-183971000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:183966000-183971000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr1:183966000-183971200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr1:183966000-183971200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr1:183966000-183971200	Weak transcription	Colon Smooth Muscle	Colon
19	chr1:183966000-183972400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:183966200-183968400	Enhancers	K562	blood
21	chr1:183966200-183970800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr1:183966200-183970800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr1:183966200-183971000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr1:183966200-183971000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr1:183966200-183971000	Weak transcription	Stomach Mucosa	stomach
26	chr1:183966200-183971200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr1:183966200-183971200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr1:183966200-183971200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr1:183966400-183971200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr1:183967000-183967400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:183967000-183967600	Enhancers	HMEC	breast
32	chr1:183967000-183967600	Enhancers	NHEK	skin
33	chr1:183967200-183967600	Weak transcription	Brain Angular Gyrus	brain
34	chr1:183967200-183970600	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links