Variant report

Variant	rs60321215
Chromosome Location	chr5:148074881-148074882
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10071589	1.00[ASN][1000 genomes]
rs11953886	1.00[ASN][1000 genomes]
rs11955066	0.92[AFR][1000 genomes]
rs2895773	1.00[ASN][1000 genomes]
rs4269282	1.00[ASN][1000 genomes]
rs55939907	1.00[ASN][1000 genomes]
rs56296220	1.00[ASN][1000 genomes]
rs6881651	0.92[AFR][1000 genomes]
rs6893833	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72820820	1.00[ASN][1000 genomes]
rs72820822	1.00[ASN][1000 genomes]
rs73795114	0.83[AMR][1000 genomes]
rs73795118	0.97[AFR][1000 genomes]
rs73795119	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023832	chr5:147920935-148110926	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv537917	chr5:147920935-148110926	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv883021	chr5:148060817-148182123	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148074400-148076000	Enhancers	Fetal Lung	lung
2	chr5:148074800-148075400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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