Variant report

Variant	rs6033174
Chromosome Location	chr20:11523083-11523084
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11087025	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6033171	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6033172	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6033173	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6040759	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs6040760	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851689	chr20:11515516-11758411	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11513000-11523600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:11518200-11523600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr20:11520000-11523600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr20:11521600-11523200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr20:11521800-11523400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr20:11521800-11523600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr20:11522000-11523200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr20:11522000-11523200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr20:11522000-11523800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr20:11522000-11524000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr20:11522200-11523200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr20:11522200-11523600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr20:11522200-11523600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr20:11522200-11523600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr20:11522200-11523600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr20:11522200-11523800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr20:11522200-11524000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr20:11522200-11524200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr20:11523000-11523600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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