Variant report

Variant	rs60333974
Chromosome Location	chr1:227637782-227637783
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10495275	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1495843	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56164104	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57610268	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7539715	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs903687	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534002	chr1:227315186-228047108	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	nsv1001353	chr1:227474785-227660691	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1003278	chr1:227563126-227678464	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227635600-227639200	Weak transcription	Right Atrium	heart
2	chr1:227635800-227641800	Weak transcription	Brain Anterior Caudate	brain
3	chr1:227635800-227654000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:227637400-227637800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:227637400-227637800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:227637400-227640400	Enhancers	Placenta	Placenta
7	chr1:227637600-227637800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:227637600-227637800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:227637600-227637800	Enhancers	Left Ventricle	heart
10	chr1:227637600-227638400	Enhancers	K562	blood
11	chr1:227637600-227639200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:227637600-227639200	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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