Variant report

Variant	rs60334322
Chromosome Location	chr2:231500761-231500762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10192285	0.84[AFR][1000 genomes]
rs11894261	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11899262	0.97[AFR][1000 genomes]
rs13401455	1.00[EUR][1000 genomes]
rs13414208	0.93[AFR][1000 genomes]
rs57713836	0.88[AFR][1000 genomes]
rs58535872	1.00[EUR][1000 genomes]
rs61480574	1.00[EUR][1000 genomes]
rs61488557	1.00[EUR][1000 genomes]
rs73992486	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73992488	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875955	chr2:231440555-231500805	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv527319	chr2:231492816-231501467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv6381	chr2:231500652-231500840	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231500600-231500800	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr2:231500600-231501400	Enhancers	GM12878-XiMat	blood
3	chr2:231500600-231502200	Enhancers	Primary B cells from peripheral blood	blood
4	chr2:231500600-231502200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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