Variant report

Variant	rs60336225
Chromosome Location	chr13:30697138-30697139
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30689194..30691299-chr13:30696452..30698373,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58400270	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59213166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60563035	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7338443	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9670920	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040215	chr13:30621351-30741022	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541745	chr13:30621351-30741022	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv832572	chr13:30650005-30835256	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30689600-30697400	Weak transcription	Aorta	Aorta
2	chr13:30689600-30697800	Weak transcription	Spleen	Spleen
3	chr13:30690200-30699800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:30691200-30699400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr13:30693200-30697200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr13:30694400-30698200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr13:30694400-30699600	Weak transcription	NH-A	brain
8	chr13:30694400-30699800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr13:30694400-30707000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr13:30694600-30699400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr13:30694600-30699400	Weak transcription	Osteobl	bone
12	chr13:30694600-30699600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr13:30694600-30699600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr13:30694600-30699600	Weak transcription	HSMM	muscle
15	chr13:30694600-30699600	Weak transcription	NHDF-Ad	bronchial
16	chr13:30694800-30698400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr13:30694800-30699800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr13:30695000-30698400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr13:30695000-30699400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr13:30695000-30701000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr13:30695600-30697800	Weak transcription	Colon Smooth Muscle	Colon
22	chr13:30696000-30699600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr13:30696200-30699400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr13:30696400-30699200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr13:30696400-30699400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr13:30696400-30699400	Weak transcription	HMEC	breast
27	chr13:30696400-30707000	Weak transcription	Thymus	Thymus
28	chr13:30696600-30697800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr13:30696600-30698000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr13:30696600-30702800	Weak transcription	Fetal Thymus	thymus
31	chr13:30696800-30699400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr13:30697000-30697400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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