Variant report
Variant | rs6033895 |
---|---|
Chromosome Location | chr20:14157309-14157310 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs6033866 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6033892 | 1.00[YRI][hapmap] |
rs6033894 | 1.00[YRI][hapmap] |
rs6033899 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6042472 | 1.00[AMR][1000 genomes] |
rs6042477 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6042480 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6042502 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6042526 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6042542 | 1.00[YRI][hapmap] |
rs6042545 | 1.00[YRI][hapmap] |
rs6042551 | 1.00[AMR][1000 genomes] |
rs6042557 | 1.00[AMR][1000 genomes] |
rs6042562 | 1.00[YRI][hapmap] |
rs6042579 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6042586 | 1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73255017 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1066810 | chr20:13451869-14432454 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
2 | nsv531479 | chr20:13632491-14434432 | Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
3 | nsv585438 | chr20:14054163-14171905 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
4 | nsv1057486 | chr20:14077828-14469129 | ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
5 | nsv1058887 | chr20:14080114-14173534 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
6 | nsv532514 | chr20:14097780-14288315 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:14156400-14159400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr20:14156800-14157800 | Enhancers | Fetal Brain Male | brain |