Variant report

Variant	rs6033979
Chromosome Location	chr20:1508141-1508142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11696739	0.82[CHB][hapmap]
rs11696842	0.87[CHB][hapmap]
rs11697985	0.93[CHB][hapmap]
rs12480515	0.93[CHB][hapmap];0.83[ASN][1000 genomes]
rs1535882	0.82[CHB][hapmap]
rs2209313	0.87[CHB][hapmap]
rs2243423	0.93[CHB][hapmap]
rs2243603	0.93[CHB][hapmap]
rs2246154	1.00[CHB][hapmap]
rs2249317	1.00[CHB][hapmap]
rs2250199	1.00[CHB][hapmap]
rs2252155	0.89[ASN][1000 genomes]
rs2253427	0.93[CHB][hapmap]
rs2254194	0.93[CHB][hapmap]
rs2254448	0.93[CHB][hapmap]
rs2256520	1.00[CHB][hapmap]
rs2262338	0.89[ASN][1000 genomes]
rs2263655	0.84[ASN][1000 genomes]
rs2263664	0.93[CHB][hapmap]
rs2317870	0.93[CHB][hapmap]
rs2422615	0.93[CHB][hapmap]
rs2422631	0.93[CHB][hapmap]
rs2746609	0.93[CHB][hapmap]
rs3761268	0.87[CHB][hapmap]
rs3761269	0.86[CHB][hapmap]
rs3848783	0.87[ASN][1000 genomes]
rs3848784	1.00[CHB][hapmap]
rs3848785	0.87[ASN][1000 genomes]
rs3848786	0.93[CHB][hapmap];0.85[ASN][1000 genomes]
rs3848787	0.93[CHB][hapmap];0.81[ASN][1000 genomes]
rs3848788	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs6034006	1.00[CHB][hapmap]
rs6034039	0.93[CHB][hapmap];0.87[ASN][1000 genomes]
rs6042800	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6042909	0.87[ASN][1000 genomes]
rs6079527	0.93[CHB][hapmap];0.89[ASN][1000 genomes]
rs6079531	0.89[ASN][1000 genomes]
rs6079606	0.81[ASN][1000 genomes]
rs6105334	0.93[CHB][hapmap];0.83[ASN][1000 genomes]
rs6110353	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6514526	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522008	chr20:1340390-1638578	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv585206	chr20:1386473-1714362	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv833893	chr20:1414615-1527779	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv2758509	chr20:1476781-1679256	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	esv2758777	chr20:1476781-1679256	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv428374	chr20:1476781-1679256	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv912596	chr20:1486637-1877150	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
8	nsv1057036	chr20:1493425-1869281	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
9	nsv912597	chr20:1500506-1877150	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6033979	RP4-576H24.5	cis	Whole Blood	GTEx
rs6033979	SIRPB1	cis	Whole Blood	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:1506600-1508200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr20:1508000-1513800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr20:1508000-1515200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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