Variant report

Variant	rs6034255
Chromosome Location	chr20:15655604-15655605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6034252	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6034256	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs6043426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6043427	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15652400-15657000	Enhancers	Osteobl	bone
2	chr20:15652600-15657400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr20:15652600-15657400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr20:15652600-15657400	Enhancers	NHDF-Ad	bronchial
5	chr20:15652600-15657800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr20:15653000-15656000	Enhancers	Fetal Heart	heart
7	chr20:15653000-15656600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr20:15653200-15657400	Enhancers	HSMM	muscle
9	chr20:15653400-15657000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr20:15653400-15660200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr20:15653600-15655800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr20:15654400-15657000	Enhancers	NHLF	lung
13	chr20:15655000-15657400	Enhancers	Colon Smooth Muscle	Colon
14	chr20:15655000-15657800	Enhancers	Fetal Kidney	kidney
15	chr20:15655200-15657800	Enhancers	Fetal Lung	lung
16	chr20:15655600-15656600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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