Variant report

Variant	rs6034535
Chromosome Location	chr20:16552964-16552965
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:16507244..16509021-chr20:16550552..16553187,2	MCF-7	breast:
2	chr20:16545320..16547159-chr20:16551399..16553225,2	K562	blood:
3	chr20:16550509..16554024-chr20:16560848..16563415,3	MCF-7	breast:
4	chr20:16454633..16456695-chr20:16551196..16553278,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1007144	0.83[CEU][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes]
rs13042615	0.90[EUR][1000 genomes]
rs13044683	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2179905	0.93[EUR][1000 genomes]
rs2328045	0.96[EUR][1000 genomes]
rs34548254	0.96[EUR][1000 genomes]
rs34678561	0.93[EUR][1000 genomes]
rs35610860	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4813225	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55776240	0.96[EUR][1000 genomes]
rs6034539	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6044121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6044124	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6044128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6044141	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6044146	0.92[EUR][1000 genomes]
rs6105631	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6111190	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6111195	0.93[EUR][1000 genomes]
rs6514692	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6514693	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs926772	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs926773	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs997972	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6034535	KIF16B	cis	Muscle Skeletal	GTEx
rs6034535	KIF16B	cis	Whole Blood	GTEx
rs6034535	KIF16B	cis	Thyroid	GTEx
rs6034535	C20orf23	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16509200-16553000	Weak transcription	Primary T cells from cord blood	blood
2	chr20:16534600-16553600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:16537400-16553400	Weak transcription	Aorta	Aorta
4	chr20:16544400-16553000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr20:16544600-16553000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr20:16546600-16553400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr20:16547200-16553000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr20:16550000-16553000	Weak transcription	Stomach Mucosa	stomach
9	chr20:16550000-16553200	Weak transcription	Fetal Kidney	kidney
10	chr20:16550400-16553000	Weak transcription	Fetal Intestine Large	intestine
11	chr20:16550400-16553200	Weak transcription	GM12878-XiMat	blood
12	chr20:16551600-16553000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr20:16551600-16553000	Flanking Active TSS	NHEK	skin
14	chr20:16551800-16553000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr20:16551800-16553000	Weak transcription	Right Ventricle	heart
16	chr20:16551800-16553200	Enhancers	Adipose Nuclei	Adipose
17	chr20:16551800-16553200	Enhancers	Small Intestine	intestine
18	chr20:16551800-16553400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr20:16551800-16555000	Active TSS	Colonic Mucosa	Colon
20	chr20:16552000-16553000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr20:16552000-16553000	Weak transcription	Brain Anterior Caudate	brain
22	chr20:16552000-16553200	Enhancers	Brain Angular Gyrus	brain
23	chr20:16552000-16553400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr20:16552000-16553400	Weak transcription	Esophagus	oesophagus
25	chr20:16552000-16553400	Weak transcription	Thymus	Thymus
26	chr20:16552200-16553000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr20:16552200-16553000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr20:16552200-16553000	Weak transcription	Fetal Intestine Small	intestine
29	chr20:16552200-16553000	Weak transcription	Psoas Muscle	Psoas
30	chr20:16552200-16553200	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr20:16552200-16553200	Enhancers	Primary B cells from cord blood	blood
32	chr20:16552200-16553200	Weak transcription	Fetal Brain Female	brain
33	chr20:16552200-16553400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr20:16552200-16553400	Enhancers	Fetal Brain Male	brain
35	chr20:16552200-16553400	Weak transcription	Fetal Muscle Leg	muscle
36	chr20:16552200-16553400	Weak transcription	Placenta	Placenta
37	chr20:16552200-16553400	Weak transcription	Lung	lung
38	chr20:16552200-16553400	Weak transcription	Pancreas	Pancrea
39	chr20:16552200-16553600	Weak transcription	Gastric	stomach
40	chr20:16552200-16553600	Weak transcription	Spleen	Spleen
41	chr20:16552200-16554200	Active TSS	Rectal Mucosa Donor 31	rectum
42	chr20:16552200-16556600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr20:16552400-16553200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr20:16552400-16553400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr20:16552400-16555000	Active TSS	Ovary	ovary
46	chr20:16552600-16553000	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr20:16552600-16553000	Enhancers	Hela-S3	cervix
48	chr20:16552600-16553200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
49	chr20:16552600-16553200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr20:16552600-16553200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

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