Variant report

Variant	rs60347743
Chromosome Location	chr6:144016239-144016240
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144009959..144011502-chr6:144013449..144016270,2	K562	blood:
2	chr6:144015602..144018341-chr6:144021601..144023244,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs59530956	1.00[AFR][1000 genomes]
rs61181766	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886737	chr6:144010570-144033992	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144005000-144020400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:144006000-144017800	Weak transcription	Fetal Heart	heart
3	chr6:144009400-144016600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:144010200-144019600	Weak transcription	Spleen	Spleen
5	chr6:144010400-144017800	Weak transcription	Ovary	ovary
6	chr6:144010400-144020000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:144011600-144053200	Weak transcription	Hela-S3	cervix
8	chr6:144011800-144017600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:144011800-144019600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:144011800-144019800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:144012200-144018600	Enhancers	Stomach Mucosa	stomach
12	chr6:144012200-144026800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:144012400-144018000	Enhancers	Fetal Stomach	stomach
14	chr6:144012800-144016600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:144013200-144017600	Weak transcription	Osteobl	bone
16	chr6:144013400-144016600	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:144013400-144017000	Weak transcription	Liver	Liver
18	chr6:144013400-144017800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:144013400-144017800	Weak transcription	NHDF-Ad	bronchial
20	chr6:144013800-144019200	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr6:144014000-144017200	Weak transcription	Aorta	Aorta
22	chr6:144014000-144017800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:144014000-144019600	Weak transcription	Placenta	Placenta
24	chr6:144014200-144016400	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr6:144014200-144018200	Enhancers	Stomach Smooth Muscle	stomach
26	chr6:144014200-144019800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:144014200-144019800	Weak transcription	Right Atrium	heart
28	chr6:144014200-144027800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:144014200-144039800	Weak transcription	Pancreas	Pancrea
30	chr6:144014400-144016400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:144014400-144019000	Enhancers	HepG2	liver
32	chr6:144014400-144022600	Weak transcription	Fetal Intestine Large	intestine
33	chr6:144014600-144020200	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr6:144014800-144016600	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr6:144014800-144017000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr6:144014800-144017400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:144014800-144017400	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr6:144014800-144017400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:144014800-144017800	Enhancers	HUVEC	blood vessel
40	chr6:144014800-144018000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:144014800-144018200	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr6:144014800-144019000	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr6:144014800-144020800	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr6:144015000-144016600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:144015000-144016800	Enhancers	HMEC	breast
46	chr6:144015000-144018200	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr6:144015000-144018200	Enhancers	Fetal Muscle Leg	muscle
48	chr6:144015000-144018400	Enhancers	Fetal Lung	lung
49	chr6:144015000-144019800	Enhancers	Colon Smooth Muscle	Colon
50	chr6:144015200-144016600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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