Variant report

Variant	rs60351949
Chromosome Location	chr2:55198661-55198662
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55190781..55193657-chr2:55198367..55200199,2	K562	blood:
2	chr2:55198243..55200430-chr2:55275521..55278393,2	MCF-7	breast:
3	chr2:55195869..55197384-chr2:55197903..55200472,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RTN4-1	chr2:55196736-55198803	ENSG00000248316

Variant related genes	Relation type
ENSG00000214595	Chromatin interaction
ENSG00000115310	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs887	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv582029	chr2:55159043-55204498	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55173200-55203400	Weak transcription	Gastric	stomach
2	chr2:55181600-55203400	Weak transcription	Ovary	ovary
3	chr2:55183200-55206800	Weak transcription	Stomach Mucosa	stomach
4	chr2:55184800-55214800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:55190000-55203400	Weak transcription	Small Intestine	intestine
6	chr2:55191200-55199200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:55191800-55203600	Weak transcription	Fetal Lung	lung
8	chr2:55191800-55211600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr2:55191800-55234200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:55193400-55199000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr2:55193400-55201800	Strong transcription	Muscle Satellite Cultured Cells	--
12	chr2:55193400-55214800	Strong transcription	HepG2	liver
13	chr2:55193600-55200800	Strong transcription	A549	lung
14	chr2:55193600-55201800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:55193600-55214600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr2:55193800-55202400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:55193800-55211800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr2:55194000-55199000	Strong transcription	Stomach Smooth Muscle	stomach
19	chr2:55194000-55211800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr2:55194200-55204400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr2:55194400-55200200	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr2:55194400-55200200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr2:55194400-55201400	Strong transcription	Primary B cells from cord blood	blood
24	chr2:55194600-55202200	Strong transcription	NHDF-Ad	bronchial
25	chr2:55194600-55204400	Strong transcription	Primary T cells from cord blood	blood
26	chr2:55194800-55201200	Strong transcription	Primary B cells from peripheral blood	blood
27	chr2:55194800-55202400	Strong transcription	NHLF	lung
28	chr2:55195000-55199600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr2:55195000-55203200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr2:55195000-55215200	Strong transcription	Dnd41	blood
31	chr2:55195200-55199200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr2:55195200-55201200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr2:55195200-55201600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr2:55195200-55202000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr2:55195200-55202600	Strong transcription	Osteobl	bone
36	chr2:55195200-55205600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr2:55195200-55205800	Strong transcription	HMEC	breast
38	chr2:55195400-55199400	Strong transcription	Fetal Intestine Large	intestine
39	chr2:55195400-55202200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr2:55195400-55205200	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr2:55195600-55210800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr2:55195800-55199000	Strong transcription	Fetal Kidney	kidney
43	chr2:55195800-55199600	Enhancers	Fetal Heart	heart
44	chr2:55195800-55216200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr2:55196000-55202200	Strong transcription	NH-A	brain
46	chr2:55196000-55203400	Weak transcription	Pancreas	Pancrea
47	chr2:55196000-55205800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr2:55196200-55198800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr2:55196200-55199400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr2:55196200-55200800	Weak transcription	Brain Anterior Caudate	brain

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