Variant report

Variant	rs60354283
Chromosome Location	chr7:70779018-70779019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57307767	0.98[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6955324	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:70773400-70780800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:70773400-70789800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70774000-70779800	Weak transcription	Fetal Stomach	stomach
5	chr7:70777000-70788800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:70778000-70779400	Enhancers	Rectal Smooth Muscle	rectum
7	chr7:70778200-70779200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr7:70778200-70779400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr7:70778200-70779400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:70778200-70779400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:70778200-70779600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:70778200-70779600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:70778400-70779200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:70778400-70779400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:70778400-70779400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:70778800-70780200	Weak transcription	Fetal Muscle Leg	muscle
17	chr7:70778800-70784400	Weak transcription	Brain Anterior Caudate	brain
18	chr7:70779000-70779800	Weak transcription	Fetal Lung	lung
19	chr7:70779000-70780600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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