Variant report

Variant	rs60354487
Chromosome Location	chr1:209725169-209725170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2206106	1.00[AMR][1000 genomes]
rs61481404	1.00[AMR][1000 genomes]
rs6682392	1.00[AMR][1000 genomes]
rs6691292	1.00[AMR][1000 genomes]
rs73081610	1.00[AMR][1000 genomes]
rs73091575	1.00[AMR][1000 genomes]
rs73091587	1.00[AMR][1000 genomes]
rs73093683	1.00[AMR][1000 genomes]
rs73093684	1.00[AMR][1000 genomes]
rs7545918	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209720400-209726000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:209720600-209728200	Weak transcription	Esophagus	oesophagus
3	chr1:209722000-209725200	Enhancers	Fetal Intestine Small	intestine
4	chr1:209722200-209725400	Enhancers	Fetal Intestine Large	intestine
5	chr1:209723400-209725800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:209723400-209725800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:209723400-209726000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:209723400-209726200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:209724200-209725600	Weak transcription	HMEC	breast
10	chr1:209724200-209725800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:209724400-209725800	Weak transcription	NHEK	skin
12	chr1:209724800-209725200	Enhancers	Lung	lung
13	chr1:209724800-209725600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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