Variant report

Variant	rs60355714
Chromosome Location	chr3:24283061-24283062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57339926	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58509679	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6782951	1.00[AMR][1000 genomes]
rs6789536	0.83[AMR][1000 genomes]
rs7613985	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24262200-24283200	Weak transcription	Fetal Stomach	stomach
2	chr3:24262600-24283200	Weak transcription	Left Ventricle	heart
3	chr3:24267000-24283800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:24268200-24291000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:24272400-24301400	Weak transcription	Fetal Intestine Large	intestine
6	chr3:24276600-24286200	Weak transcription	Liver	Liver
7	chr3:24276800-24283200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:24276800-24283800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:24277000-24283400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:24277200-24286200	Weak transcription	HepG2	liver
11	chr3:24277400-24283400	Weak transcription	Pancreas	Pancrea
12	chr3:24279400-24283800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:24279600-24283200	Weak transcription	Aorta	Aorta
14	chr3:24279600-24283400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:24279600-24291400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr3:24279800-24283400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:24280000-24283200	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:24280000-24283400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr3:24280200-24283200	Weak transcription	Brain Angular Gyrus	brain
20	chr3:24280200-24283200	Weak transcription	Stomach Mucosa	stomach
21	chr3:24280200-24283400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:24280200-24283400	Weak transcription	Fetal Lung	lung
23	chr3:24280200-24283400	Weak transcription	A549	lung
24	chr3:24280400-24283200	Weak transcription	Fetal Brain Female	brain
25	chr3:24280400-24283200	Weak transcription	NHEK	skin
26	chr3:24280400-24283400	Weak transcription	NH-A	brain
27	chr3:24280400-24283400	Weak transcription	NHLF	lung
28	chr3:24280400-24283600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr3:24280600-24283200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr3:24280600-24283200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr3:24280600-24283400	Weak transcription	HSMM	muscle
32	chr3:24280800-24283200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:24280800-24283200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr3:24280800-24283200	Weak transcription	HSMMtube	muscle
35	chr3:24280800-24283400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr3:24281000-24283200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:24281000-24284000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr3:24282200-24283400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr3:24282200-24284800	Enhancers	Psoas Muscle	Psoas
40	chr3:24282400-24283200	Enhancers	Lung	lung
41	chr3:24282400-24285600	Strong transcription	Fetal Intestine Small	intestine
42	chr3:24282600-24283400	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr3:24282600-24285600	Enhancers	Brain Germinal Matrix	brain
44	chr3:24282800-24283400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr3:24282800-24283600	Enhancers	Stomach Smooth Muscle	stomach
46	chr3:24282800-24284400	Enhancers	Right Ventricle	heart
47	chr3:24282800-24284600	Enhancers	Esophagus	oesophagus
48	chr3:24282800-24284600	Enhancers	Fetal Muscle Leg	muscle
49	chr3:24282800-24285200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr3:24282800-24285200	Enhancers	NHDF-Ad	bronchial

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