Variant report

Variant	rs6036224
Chromosome Location	chr20:22796178-22796179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:22795661..22796604-chr20:22955064..22955657,3	MCF-7	breast:
2	chr20:22791420..22794009-chr20:22795850..22798324,2	MCF-7	breast:
3	chr20:22794571..22796277-chr20:23186495..23188754,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs6048357	0.99[EUR][1000 genomes]
rs6048360	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6082845	0.97[EUR][1000 genomes]
rs6082847	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6082861	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6082863	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6082864	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6132548	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6137759	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6137760	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6137761	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62201996	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv3334	chr20:22773462-22818362	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22786400-22796600	Weak transcription	HSMMtube	muscle
2	chr20:22792400-22799000	Weak transcription	Placenta	Placenta
3	chr20:22792600-22796400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:22793800-22796800	Enhancers	Dnd41	blood
5	chr20:22794400-22797200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr20:22794600-22796200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr20:22794600-22797200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr20:22794800-22797000	Enhancers	Primary hematopoietic stem cells	blood
9	chr20:22795000-22797200	Enhancers	Fetal Muscle Leg	muscle
10	chr20:22795400-22796200	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr20:22795600-22796400	Enhancers	Brain Hippocampus Middle	brain
12	chr20:22795600-22796600	Enhancers	Fetal Muscle Trunk	muscle
13	chr20:22795600-22797000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr20:22795600-22797200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr20:22795600-22798600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr20:22795800-22796200	Enhancers	Brain Angular Gyrus	brain
17	chr20:22795800-22796400	Enhancers	Brain Anterior Caudate	brain
18	chr20:22795800-22796800	Enhancers	Brain Substantia Nigra	brain
19	chr20:22795800-22802400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr20:22796000-22796200	Enhancers	Fetal Stomach	stomach
21	chr20:22796000-22796800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr20:22796000-22797200	Enhancers	Cortex derived primary cultured neurospheres	brain

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