Variant report

Variant	rs60366628
Chromosome Location	chr8:8959334-8959335
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:8957877..8959482-chr8:8962692..8965059,2	K562	blood:
2	chr8:8958264..8961787-chr8:8977169..8981598,5	MCF-7	breast:
3	chr8:8957620..8959986-chr8:9006127..9008421,2	MCF-7	breast:
4	chr8:8952658..8954471-chr8:8958046..8960043,2	K562	blood:
5	chr8:8951477..8953805-chr8:8956815..8960105,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173281	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs57395617	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs57859383	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs57935527	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs59021004	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59576472	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61648635	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6995759	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73520791	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73520793	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73520798	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73522703	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73522713	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73522718	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73526352	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73526355	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73526356	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73526358	1.00[ASN][1000 genomes]
rs73526366	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73526369	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73526377	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73526388	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73526398	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73526401	0.92[ASN][1000 genomes]
rs73528107	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73528109	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv523098	chr8:8944307-8982396	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv526092	chr8:8944307-8982396	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1022328	chr8:8954003-9061281	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8935400-8959600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr8:8954000-8959400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:8954000-8959600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr8:8954200-8960400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr8:8954200-8960800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:8954400-8959600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:8954600-8961800	Weak transcription	Lung	lung
8	chr8:8955200-8959400	Weak transcription	Pancreas	Pancrea
9	chr8:8955200-8962000	Weak transcription	Gastric	stomach
10	chr8:8956800-8968000	Enhancers	Fetal Intestine Large	intestine
11	chr8:8957200-8963800	Enhancers	Fetal Intestine Small	intestine
12	chr8:8957600-8959400	Weak transcription	K562	blood
13	chr8:8957800-8959600	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr8:8957800-8960000	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr8:8958200-8963800	Enhancers	Stomach Mucosa	stomach
16	chr8:8958800-8960000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:8958800-8960800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:8958800-8960800	Enhancers	Colonic Mucosa	Colon
19	chr8:8958800-8960800	Enhancers	Fetal Lung	lung
20	chr8:8959000-8959800	Enhancers	Small Intestine	intestine
21	chr8:8959000-8963400	Enhancers	Liver	Liver
22	chr8:8959200-8959400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr8:8959200-8959400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
24	chr8:8959200-8959800	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr8:8959200-8959800	Enhancers	A549	lung
26	chr8:8959200-8960000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr8:8959200-8960200	Flanking Active TSS	Fetal Heart	heart
28	chr8:8959200-8960400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr8:8959200-8960400	Bivalent Enhancer	HepG2	liver
30	chr8:8959200-8962600	Enhancers	Fetal Muscle Leg	muscle

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