Variant report

Variant	rs6038
Chromosome Location	chr1:169515839-169515840
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169434950..169436192-chr1:169515249..169516296,7	MCF-7	breast:
2	chr1:169452546..169456212-chr1:169513561..169516208,4	K562	blood:
3	chr1:169510436..169512418-chr1:169514269..169516717,2	MCF-7	breast:
4	chr1:169515126..169516318-chr21:43623703..43624223,3	K562	blood:
5	chr1:168572434..168572967-chr1:169515424..169516289,2	MCF-7	breast:
6	chr1:169449555..169458933-chr1:169508181..169519645,22	MCF-7	breast:
7	chr1:169453402..169457978-chr1:169510259..169517954,11	MCF-7	breast:
8	chr1:169478658..169479250-chr1:169515761..169516306,2	MCF-7	breast:
9	chr1:169435747..169436728-chr1:169515625..169516171,2	MCF-7	breast:
10	chr1:169455113..169455816-chr1:169515655..169516297,2	MCF-7	breast:
11	chr1:169479026..169479808-chr1:169515737..169516314,2	MCF-7	breast:
12	chr1:169434984..169435744-chr1:169515279..169516244,3	MCF-7	breast:
13	chr1:169435660..169436192-chr1:169515320..169516315,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3917804	1.00[AMR][1000 genomes]
rs9332497	1.00[AMR][1000 genomes]
rs9332552	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169498400-169524000	Weak transcription	Placenta	Placenta
2	chr1:169499000-169519000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr1:169500200-169526800	Weak transcription	Left Ventricle	heart
4	chr1:169505800-169534800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr1:169506200-169542800	Weak transcription	Right Ventricle	heart
6	chr1:169507000-169530800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr1:169511000-169520000	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr1:169513600-169525800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr1:169515200-169516000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:169515200-169516400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:169515200-169516400	Genic enhancers	Liver	Liver
12	chr1:169515600-169517200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr1:169515600-169517200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr1:169515800-169517200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:169515800-169518000	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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