Variant report

Variant	rs60390705
Chromosome Location	chr7:11831055-11831056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10279006	0.85[AFR][1000 genomes]
rs10499401	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10499404	0.82[ASN][1000 genomes]
rs10499406	0.80[ASN][1000 genomes]
rs16877173	0.80[ASN][1000 genomes]
rs16877182	0.82[ASN][1000 genomes]
rs16877184	0.80[ASN][1000 genomes]
rs17165136	0.82[ASN][1000 genomes]
rs17165141	0.82[ASN][1000 genomes]
rs17165148	0.82[ASN][1000 genomes]
rs58260576	0.85[AFR][1000 genomes]
rs59480615	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61577547	0.82[AFR][1000 genomes]
rs7341453	0.82[ASN][1000 genomes]
rs7782151	0.84[AFR][1000 genomes]
rs9632554	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv830905	chr7:11793513-11941594	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11824200-11834200	Weak transcription	Fetal Brain Male	brain
2	chr7:11830800-11831400	Flanking Active TSS	A549	lung
3	chr7:11830800-11832400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links