Variant report

Variant	rs60392489
Chromosome Location	chr12:64368162-64368163
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64360379..64362795-chr12:64366737..64368794,2	MCF-7	breast:
2	chr12:64366069..64368652-chr12:64370868..64372528,3	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11175220	1.00[AMR][1000 genomes]
rs12296441	1.00[EUR][1000 genomes]
rs12297618	1.00[AMR][1000 genomes]
rs12302441	1.00[EUR][1000 genomes]
rs12306001	1.00[AMR][1000 genomes]
rs12307017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12313251	1.00[EUR][1000 genomes]
rs12315032	1.00[EUR][1000 genomes]
rs12316287	1.00[EUR][1000 genomes]
rs12318085	1.00[EUR][1000 genomes]
rs12320688	1.00[EUR][1000 genomes]
rs17099997	1.00[EUR][1000 genomes]
rs17100007	1.00[EUR][1000 genomes]
rs17100009	1.00[EUR][1000 genomes]
rs17100013	1.00[EUR][1000 genomes]
rs55801058	1.00[EUR][1000 genomes]
rs57074356	1.00[EUR][1000 genomes]
rs57138272	1.00[EUR][1000 genomes]
rs57140731	1.00[EUR][1000 genomes]
rs57540857	1.00[EUR][1000 genomes]
rs57937852	1.00[EUR][1000 genomes]
rs58129443	1.00[EUR][1000 genomes]
rs58592474	1.00[AMR][1000 genomes]
rs59161915	1.00[EUR][1000 genomes]
rs61411778	1.00[AMR][1000 genomes]
rs74097504	1.00[EUR][1000 genomes]
rs74097515	1.00[EUR][1000 genomes]
rs74097516	1.00[EUR][1000 genomes]
rs74097517	1.00[EUR][1000 genomes]
rs74097545	1.00[EUR][1000 genomes]
rs74097547	1.00[EUR][1000 genomes]
rs74099369	1.00[EUR][1000 genomes]
rs74099375	1.00[EUR][1000 genomes]
rs74099376	1.00[EUR][1000 genomes]
rs74099377	1.00[EUR][1000 genomes]
rs74099378	1.00[EUR][1000 genomes]
rs74099379	1.00[EUR][1000 genomes]
rs74099380	1.00[EUR][1000 genomes]
rs74099381	1.00[EUR][1000 genomes]
rs74099382	1.00[EUR][1000 genomes]
rs74099383	1.00[EUR][1000 genomes]
rs74099384	1.00[EUR][1000 genomes]
rs74099385	1.00[EUR][1000 genomes]
rs74099392	1.00[EUR][1000 genomes]
rs74099393	1.00[EUR][1000 genomes]
rs74099395	1.00[EUR][1000 genomes]
rs74099398	1.00[EUR][1000 genomes]
rs74099400	1.00[EUR][1000 genomes]
rs7961633	1.00[EUR][1000 genomes]
rs7961964	1.00[EUR][1000 genomes]
rs7976142	1.00[EUR][1000 genomes]
rs7976369	1.00[EUR][1000 genomes]
rs7977480	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046836	chr12:63392391-64377169	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv832442	chr12:64228071-64442771	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64312400-64385000	Weak transcription	Aorta	Aorta
2	chr12:64361800-64371600	Weak transcription	HMEC	breast
3	chr12:64361800-64371800	Weak transcription	NH-A	brain
4	chr12:64362000-64369800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:64362000-64371600	Weak transcription	NHEK	skin
6	chr12:64362600-64371600	Weak transcription	HSMM	muscle
7	chr12:64362600-64371800	Weak transcription	Brain Substantia Nigra	brain
8	chr12:64362600-64371800	Weak transcription	Osteobl	bone
9	chr12:64362600-64385600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr12:64362800-64377600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr12:64362800-64378800	Weak transcription	Pancreas	Pancrea
12	chr12:64362800-64396000	Weak transcription	Psoas Muscle	Psoas
13	chr12:64363000-64371600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr12:64364000-64370000	Weak transcription	NHLF	lung
15	chr12:64364200-64376200	Weak transcription	Brain Hippocampus Middle	brain
16	chr12:64364200-64376800	Weak transcription	HSMMtube	muscle
17	chr12:64364200-64385800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr12:64365000-64371400	Weak transcription	Fetal Kidney	kidney
19	chr12:64365000-64375000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr12:64365000-64383000	Weak transcription	Stomach Mucosa	stomach
21	chr12:64365800-64378600	Weak transcription	Fetal Intestine Small	intestine
22	chr12:64365800-64379400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr12:64366400-64383600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr12:64366600-64368800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr12:64367000-64368800	Enhancers	A549	lung
26	chr12:64367000-64369400	Enhancers	NHDF-Ad	bronchial
27	chr12:64367200-64369000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr12:64367200-64369800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr12:64367600-64368200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr12:64367800-64368200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr12:64368000-64371000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr12:64368000-64374600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr12:64368000-64376000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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