Variant report

Variant	rs60392559
Chromosome Location	chr5:127916171-127916172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs4452595	0.82[EUR][1000 genomes]
rs4481390	0.86[AMR][1000 genomes]
rs4836380	0.86[AMR][1000 genomes]
rs57558727	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59283285	0.86[AMR][1000 genomes]
rs59648971	0.86[AMR][1000 genomes]
rs60139424	0.82[EUR][1000 genomes]
rs60596958	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs60704927	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61037016	0.86[AMR][1000 genomes]
rs61333576	0.84[AMR][1000 genomes]
rs6595847	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6874940	0.82[EUR][1000 genomes]
rs73350635	0.82[EUR][1000 genomes]
rs73351886	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73352718	0.83[AFR][1000 genomes]
rs73353662	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73353664	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7707383	0.83[AMR][1000 genomes]
rs7721941	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7729467	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531991	chr5:127624564-127966085	Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv427734	chr5:127805281-128088632	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127914400-127916200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:127914600-127922600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:127915600-127916600	Enhancers	A549	lung
4	chr5:127915800-127916800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:127915800-127917200	Enhancers	Hela-S3	cervix
6	chr5:127915800-127919200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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