Variant report

Variant	rs60405761
Chromosome Location	chr11:119534318-119534319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119533700..119535949-chr19:35605499..35607605,2	MCF-7	breast:
2	chr11:119533436..119537247-chr11:119598827..119601563,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254854	Chromatin interaction
ENSG00000110400	Chromatin interaction
ENSG00000089356	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11217375	0.81[ASN][1000 genomes]
rs58016473	1.00[AMR][1000 genomes]
rs58042204	1.00[AMR][1000 genomes]
rs58088202	1.00[AMR][1000 genomes]
rs58826754	1.00[AMR][1000 genomes]
rs59612995	1.00[ASN][1000 genomes]
rs59681945	1.00[ASN][1000 genomes]
rs59909583	1.00[AMR][1000 genomes]
rs60157440	1.00[AMR][1000 genomes]
rs60262839	1.00[AMR][1000 genomes]
rs73573185	1.00[EUR][1000 genomes]
rs9651690	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv898420	chr11:119488646-119541332	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv984471	chr11:119505802-119568473	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv898422	chr11:119518006-119601779	Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119523200-119541800	Weak transcription	Left Ventricle	heart
2	chr11:119523600-119536200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:119528600-119534600	Enhancers	Fetal Muscle Leg	muscle
4	chr11:119528800-119534400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:119528800-119534600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:119529400-119534400	Weak transcription	Fetal Intestine Large	intestine
7	chr11:119529600-119535800	Weak transcription	HMEC	breast
8	chr11:119529800-119536200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:119530200-119546000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:119530400-119541600	Weak transcription	Small Intestine	intestine
11	chr11:119530600-119536800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:119531000-119534600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:119531000-119534600	Weak transcription	Ovary	ovary
14	chr11:119531000-119536200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:119531000-119542000	Weak transcription	Colonic Mucosa	Colon
16	chr11:119531200-119541800	Weak transcription	Fetal Heart	heart
17	chr11:119531400-119534400	Weak transcription	Fetal Brain Female	brain
18	chr11:119531400-119536200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:119531600-119536200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:119531800-119534600	Weak transcription	Right Ventricle	heart
21	chr11:119531800-119536600	Strong transcription	Esophagus	oesophagus
22	chr11:119531800-119539800	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr11:119532000-119536200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:119532400-119535200	Enhancers	Brain Cingulate Gyrus	brain
25	chr11:119532400-119541200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr11:119532400-119544400	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr11:119532800-119535200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:119532800-119541800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:119533000-119535000	Strong transcription	Placenta	Placenta
30	chr11:119533000-119535200	Enhancers	Brain Substantia Nigra	brain
31	chr11:119533000-119535400	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr11:119533000-119542000	Weak transcription	Right Atrium	heart
33	chr11:119533000-119543400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:119533200-119535200	Enhancers	Brain Hippocampus Middle	brain
35	chr11:119533200-119535400	Enhancers	Brain Angular Gyrus	brain
36	chr11:119533200-119535600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:119533200-119537600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr11:119533600-119534600	Enhancers	HepG2	liver
39	chr11:119533800-119535200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:119533800-119535200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:119533800-119535200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:119533800-119535200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr11:119533800-119535200	Enhancers	Brain Anterior Caudate	brain
44	chr11:119533800-119535600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:119533800-119535800	Genic enhancers	Fetal Intestine Small	intestine
46	chr11:119533800-119536400	Enhancers	Pancreas	Pancrea
47	chr11:119534000-119535200	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr11:119534000-119535200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:119534000-119535600	Enhancers	H1 Cell Line	embryonic stem cell
50	chr11:119534000-119535800	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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