Variant report

Variant	rs60412347
Chromosome Location	chr14:40345678-40345679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17109985	1.00[EUR][1000 genomes]
rs1957222	1.00[EUR][1000 genomes]
rs60029883	1.00[EUR][1000 genomes]
rs7140572	1.00[EUR][1000 genomes]
rs7144517	1.00[EUR][1000 genomes]
rs73282971	1.00[EUR][1000 genomes]
rs73289388	1.00[EUR][1000 genomes]
rs73300825	1.00[EUR][1000 genomes]
rs73300833	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530658	chr14:40214958-40734070	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2751272	chr14:40216880-40913230	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv525070	chr14:40302876-40353756	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv901660	chr14:40302876-40410765	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1047949	chr14:40307360-40474579	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:40333400-40348600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:40342400-40347400	Enhancers	Fetal Intestine Large	intestine
3	chr14:40343600-40346400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:40343600-40346400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr14:40344200-40350400	Weak transcription	Fetal Intestine Small	intestine
6	chr14:40344800-40346800	Enhancers	GM12878-XiMat	blood
7	chr14:40345200-40346400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:40345200-40347400	Enhancers	Fetal Kidney	kidney
9	chr14:40345400-40346400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr14:40345400-40347000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr14:40345600-40345800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:40345600-40347400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr14:40345600-40347400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:40345600-40347600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr14:40345600-40348800	Weak transcription	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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