Variant report

Variant	rs60416917
Chromosome Location	chr9:95862511-95862512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95858505..95861349-chr9:95861790..95866603,4	K562	blood:
2	chr9:95855712..95863110-chr9:95867626..95874665,14	K562	blood:
3	chr9:95816364..95826268-chr9:95852309..95863275,20	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165233	Chromatin interaction
ENSG00000157303	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10733746	0.97[ASN][1000 genomes]
rs12378451	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1539671	0.94[ASN][1000 genomes]
rs1970623	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2895245	0.94[ASN][1000 genomes]
rs4743886	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4744173	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6479452	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7032929	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv1824329	chr9:95811604-95921347	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv893577	chr9:95812707-95872216	Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv893578	chr9:95818641-95887320	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv893579	chr9:95855100-95923091	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95859000-95862800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr9:95859000-95862800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:95859400-95876200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:95859600-95862600	Enhancers	Ovary	ovary
5	chr9:95859600-95889400	Weak transcription	Fetal Kidney	kidney
6	chr9:95859800-95862600	Enhancers	Esophagus	oesophagus
7	chr9:95860000-95862800	Enhancers	Fetal Thymus	thymus
8	chr9:95860000-95863000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr9:95860200-95872600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:95860400-95863000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:95860400-95876400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:95860800-95863000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr9:95860800-95863000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr9:95860800-95872800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr9:95861000-95862600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr9:95861000-95862600	Enhancers	Primary B cells from cord blood	blood
17	chr9:95861000-95862600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr9:95861000-95862600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr9:95861000-95862600	Enhancers	Brain Substantia Nigra	brain
20	chr9:95861000-95863000	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr9:95861000-95866000	Weak transcription	Fetal Brain Female	brain
22	chr9:95861000-95869800	Weak transcription	Aorta	Aorta
23	chr9:95861200-95862600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr9:95861200-95862800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr9:95861200-95862800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr9:95861200-95862800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr9:95861200-95863200	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr9:95861400-95862600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:95861400-95862800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr9:95861600-95862800	Strong transcription	Fetal Intestine Small	intestine
31	chr9:95861600-95865200	Weak transcription	Fetal Brain Male	brain
32	chr9:95861600-95872200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:95861800-95862600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr9:95861800-95862600	Genic enhancers	Lung	lung
35	chr9:95861800-95862600	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr9:95861800-95862600	Weak transcription	K562	blood
37	chr9:95861800-95862800	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr9:95861800-95862800	Enhancers	Brain Cingulate Gyrus	brain
39	chr9:95861800-95869800	Weak transcription	Fetal Intestine Large	intestine
40	chr9:95861800-95869800	Weak transcription	HepG2	liver
41	chr9:95861800-95882000	Weak transcription	HSMMtube	muscle
42	chr9:95862000-95862600	Genic enhancers	Primary monocytes fromperipheralblood	blood
43	chr9:95862000-95862600	Enhancers	Brain Angular Gyrus	brain
44	chr9:95862000-95862600	Genic enhancers	Colonic Mucosa	Colon
45	chr9:95862000-95862800	Enhancers	Brain Anterior Caudate	brain
46	chr9:95862000-95862800	Enhancers	Brain Hippocampus Middle	brain
47	chr9:95862000-95862800	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr9:95862000-95864200	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr9:95862000-95870600	Weak transcription	Colon Smooth Muscle	Colon
50	chr9:95862000-95871200	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links