Variant report

Variant	rs60421690
Chromosome Location	chr1:180506796-180506797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:180506220..180508858-chr1:181110608..181113467,2	K562	blood:
2	chr1:180505455..180510458-chr1:180510629..180513153,4	K562	blood:
3	chr1:180506368..180508782-chr1:180508840..180510535,2	K562	blood:
4	chr1:180502057..180505158-chr1:180505270..180507785,3	K562	blood:
5	chr1:180505841..180513650-chr1:180514886..180521271,14	K562	blood:
6	chr1:180494413..180495924-chr1:180505668..180507910,2	K562	blood:
7	chr1:180497440..180500935-chr1:180506480..180510504,4	K562	blood:
8	chr1:180506343..180506983-chr1:180832408..180833231,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57391210	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59462319	1.00[AMR][1000 genomes]
rs60089269	1.00[EUR][1000 genomes]
rs60929760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74132931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74132932	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74132935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv949311	chr1:180438895-180692815	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180491600-180511200	Weak transcription	Psoas Muscle	Psoas
2	chr1:180494400-180508200	Weak transcription	Right Ventricle	heart
3	chr1:180496600-180508000	Weak transcription	Right Atrium	heart
4	chr1:180497800-180511200	Weak transcription	Aorta	Aorta
5	chr1:180500000-180511200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:180503200-180508000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:180503600-180510200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:180504000-180509000	Weak transcription	HMEC	breast
9	chr1:180506000-180506800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:180506200-180506800	Enhancers	Fetal Heart	heart
11	chr1:180506200-180510000	Weak transcription	K562	blood
12	chr1:180506200-180513200	Weak transcription	Pancreas	Pancrea
13	chr1:180506400-180508200	Weak transcription	Left Ventricle	heart
14	chr1:180506400-180511200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:180506600-180507000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr1:180506600-180511200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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