The 2.0 version of rSNPBase

Variant report

Variant rs6042238
Chromosome Location chr20:1412268-1412269
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:1399800-1415000 Weak transcription Muscle Satellite Cultured Cells --
2 chr20:1404600-1415600 Weak transcription Brain Germinal Matrix brain
3 chr20:1404800-1415200 Weak transcription Brain Substantia Nigra brain
4 chr20:1405000-1414600 Weak transcription Thymus Thymus
5 chr20:1405000-1420000 Weak transcription Brain Inferior Temporal Lobe brain
6 chr20:1405200-1422200 Weak transcription Brain Cingulate Gyrus brain
7 chr20:1405400-1420000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
8 chr20:1405400-1420400 Weak transcription Brain Angular Gyrus brain
9 chr20:1408200-1422600 Weak transcription Fetal Brain Male brain
10 chr20:1408600-1414400 Weak transcription Primary hematopoietic stem cells blood
11 chr20:1408600-1422400 Weak transcription Colonic Mucosa Colon
12 chr20:1408800-1414200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr20:1408800-1414400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr20:1408800-1415000 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr20:1408800-1415800 Weak transcription Fetal Adrenal Gland Adrenal Gland
16 chr20:1408800-1417200 Weak transcription Fetal Muscle Trunk muscle
17 chr20:1408800-1419000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr20:1408800-1422600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr20:1408800-1422600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
20 chr20:1408800-1423400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr20:1409000-1420200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr20:1409000-1420200 Weak transcription Fetal Intestine Small intestine
23 chr20:1409600-1413400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
24 chr20:1410000-1422200 Weak transcription Esophagus oesophagus
25 chr20:1410200-1415000 Weak transcription HMEC breast
26 chr20:1410200-1429000 Weak transcription Stomach Mucosa stomach
27 chr20:1410400-1420400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr20:1410800-1412400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
29 chr20:1410800-1413200 Enhancers iPS-18 Cell Line embryonic stem cell
30 chr20:1410800-1414600 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr20:1411000-1414600 Weak transcription K562 blood
32 chr20:1411000-1415000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr20:1411000-1415000 Weak transcription Adipose Nuclei Adipose
34 chr20:1411000-1415200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr20:1411000-1415200 Weak transcription NHEK skin
36 chr20:1411000-1419600 Weak transcription Fetal Intestine Large intestine
37 chr20:1411000-1422400 Weak transcription Psoas Muscle Psoas
38 chr20:1411200-1412400 Enhancers HUES64 Cell Line embryonic stem cell
39 chr20:1411200-1420000 Weak transcription Cortex derived primary cultured neurospheres brain
40 chr20:1411200-1420600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
41 chr20:1411200-1421200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr20:1411400-1412400 Enhancers iPS-15b Cell Line embryonic stem cell
43 chr20:1411400-1415000 Weak transcription Osteobl bone
44 chr20:1411400-1415200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr20:1411400-1415200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
46 chr20:1411600-1415000 Weak transcription NHDF-Ad bronchial
47 chr20:1411800-1412600 Enhancers Dnd41 blood
48 chr20:1411800-1413600 Enhancers Primary B cells from cord blood blood
49 chr20:1411800-1420400 Weak transcription Aorta Aorta
50 chr20:1412000-1412800 Weak transcription iPS-20b Cell Line embryonic stem cell

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Last update: Aug 31, 2015