Variant report

Variant	rs6042426
Chromosome Location	chr20:13885334-13885335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13039593	1.00[LWK][hapmap];0.82[YRI][hapmap]
rs1980566	0.87[EUR][1000 genomes]
rs2180226	0.87[EUR][1000 genomes]
rs2258091	0.87[EUR][1000 genomes]
rs2423756	0.87[EUR][1000 genomes]
rs2423761	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs243909	0.87[EUR][1000 genomes]
rs243910	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs243911	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs243912	0.87[EUR][1000 genomes]
rs243914	0.87[EUR][1000 genomes]
rs378135	0.87[EUR][1000 genomes]
rs4239711	0.87[EUR][1000 genomes]
rs4239712	0.87[EUR][1000 genomes]
rs6033856	0.87[EUR][1000 genomes]
rs6042480	1.00[LWK][hapmap]
rs6105192	0.87[EUR][1000 genomes]
rs6131538	0.87[EUR][1000 genomes]
rs660710	0.87[EUR][1000 genomes]
rs761811	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916202	chr20:13421724-14043615	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv912689	chr20:13570331-14155881	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1059221	chr20:13589432-13977327	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv531479	chr20:13632491-14434432	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv1801502	chr20:13876114-13895580	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13884400-13886800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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