Variant report

Variant	rs6043389
Chromosome Location	chr20:15591000-15591001
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12624497	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12624787	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12624807	1.00[EUR][1000 genomes]
rs12626138	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16996153	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6034226	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs6105443	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15584800-15593600	Weak transcription	Fetal Intestine Small	intestine
2	chr20:15586200-15591000	Weak transcription	Liver	Liver
3	chr20:15589000-15596000	Enhancers	Fetal Heart	heart
4	chr20:15589600-15591600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr20:15589800-15592000	Enhancers	Fetal Lung	lung
6	chr20:15590000-15591600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr20:15590400-15591400	Enhancers	Colon Smooth Muscle	Colon
8	chr20:15590400-15591600	Enhancers	Stomach Smooth Muscle	stomach
9	chr20:15590600-15591200	Enhancers	Rectal Smooth Muscle	rectum
10	chr20:15590800-15591400	Enhancers	Primary hematopoietic stem cells	blood
11	chr20:15591000-15591600	Enhancers	Right Ventricle	heart
12	chr20:15591000-15595200	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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