Variant report

Variant	rs6043414
Chromosome Location	chr20:15635693-15635694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16996274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6034237	1.00[AMR][1000 genomes]
rs6034245	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6043400	1.00[AMR][1000 genomes]
rs6043411	1.00[AMR][1000 genomes]
rs6043416	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7262144	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15630400-15636400	Weak transcription	NHDF-Ad	bronchial
2	chr20:15631000-15636200	Weak transcription	Colon Smooth Muscle	Colon
3	chr20:15634000-15641200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr20:15634200-15637200	Enhancers	Fetal Heart	heart
5	chr20:15634800-15636200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr20:15634800-15637400	Enhancers	Osteobl	bone
7	chr20:15635400-15636000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr20:15635400-15636600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr20:15635400-15639000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr20:15635600-15635800	Enhancers	Fetal Kidney	kidney
11	chr20:15635600-15636400	Weak transcription	Fetal Muscle Leg	muscle
12	chr20:15635600-15637400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr20:15635600-15639000	Weak transcription	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links