Variant report

Variant	rs60435602
Chromosome Location	chr11:108394946-108394947
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:108393417..108395020-chr11:108463133..108465340,3	K562	blood:
2	chr11:108370405..108373444-chr11:108393554..108396673,3	K562	blood:
3	chr11:108367367..108369873-chr11:108393962..108396708,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178202	Chromatin interaction
ENSG00000110723	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12290045	0.83[ASN][1000 genomes]
rs34978242	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61002469	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108370400-108408800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:108371800-108406400	Weak transcription	Gastric	stomach
3	chr11:108372000-108401200	Weak transcription	Esophagus	oesophagus
4	chr11:108381000-108408800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:108382000-108396000	Weak transcription	Pancreas	Pancrea
6	chr11:108383000-108398400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:108385000-108409000	Weak transcription	Fetal Kidney	kidney
8	chr11:108385000-108414000	Weak transcription	HSMM	muscle
9	chr11:108385000-108422800	Weak transcription	Fetal Intestine Small	intestine
10	chr11:108385200-108396200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:108385200-108403600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:108385400-108395600	Weak transcription	Lung	lung
13	chr11:108385400-108409200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:108385600-108396000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:108385600-108396400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:108385600-108397000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr11:108385600-108397000	Weak transcription	K562	blood
18	chr11:108385600-108402600	Weak transcription	Brain Anterior Caudate	brain
19	chr11:108385600-108405000	Weak transcription	HMEC	breast
20	chr11:108385600-108405200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:108385600-108408400	Weak transcription	Aorta	Aorta
22	chr11:108385600-108408800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:108385600-108409400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:108385600-108412400	Weak transcription	HSMMtube	muscle
25	chr11:108389600-108397200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:108390400-108397000	Weak transcription	Liver	Liver
27	chr11:108391000-108395600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:108392000-108397800	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr11:108393600-108395000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:108394800-108395200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:108394800-108395200	Enhancers	NHEK	skin
32	chr11:108394800-108395800	Enhancers	Placenta Amnion	Placenta Amnion
33	chr11:108394800-108396200	Genic enhancers	Placenta	Placenta

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