Variant report

Variant	rs6043727
Chromosome Location	chr20:16085550-16085551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs34634120	1.00[AMR][1000 genomes]
rs6034379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6034382	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6043724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6043743	1.00[AMR][1000 genomes]
rs6043758	1.00[AMR][1000 genomes]
rs6131778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6135672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6135681	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1059778	chr20:15999519-16165895	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv544207	chr20:15999519-16165895	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1061301	chr20:16007489-16097070	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv520909	chr20:16078767-16087405	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16081800-16087600	Weak transcription	Right Atrium	heart
2	chr20:16084400-16086400	Enhancers	Primary hematopoietic stem cells	blood
3	chr20:16084600-16086200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr20:16084600-16087600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr20:16084600-16088200	Weak transcription	Colon Smooth Muscle	Colon
6	chr20:16084800-16086000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr20:16084800-16086200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr20:16085200-16085800	Enhancers	Primary B cells from peripheral blood	blood
9	chr20:16085200-16086800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr20:16085200-16089600	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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