Variant report

Variant	rs6044188
Chromosome Location	chr20:16620977-16620978
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1105698	0.91[ASN][1000 genomes]
rs1105699	0.91[ASN][1000 genomes]
rs1105701	0.91[ASN][1000 genomes]
rs12625109	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2225736	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2328050	0.90[ASN][1000 genomes]
rs2328051	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2328052	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34689669	0.85[ASN][1000 genomes]
rs4813233	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4813235	0.88[AFR][1000 genomes]
rs4814521	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4814522	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6044189	0.91[ASN][1000 genomes]
rs6105639	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6105644	0.87[ASN][1000 genomes]
rs6105645	0.90[ASN][1000 genomes]
rs6111207	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6111216	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6111217	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6111218	0.91[ASN][1000 genomes]
rs6111219	0.91[ASN][1000 genomes]
rs6111220	0.89[ASN][1000 genomes]
rs870255	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16605600-16628800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:16619400-16622400	Weak transcription	Fetal Kidney	kidney
3	chr20:16619800-16621600	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr20:16620400-16622400	Weak transcription	HSMM	muscle
5	chr20:16620600-16621600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr20:16620600-16621800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr20:16620800-16621800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr20:16620800-16623400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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