Variant report

Variant	rs6044192
Chromosome Location	chr20:1716580-1716581
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SIRPG-5	chr20:1716454-1716754	l_2058_chr20:1716453-1746293_testes

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs169354	0.82[ASN][1000 genomes]
rs202464	0.82[ASN][1000 genomes]
rs202465	0.82[ASN][1000 genomes]
rs202493	0.82[ASN][1000 genomes]
rs202494	0.82[ASN][1000 genomes]
rs202495	0.82[ASN][1000 genomes]
rs202496	0.82[ASN][1000 genomes]
rs202497	0.82[ASN][1000 genomes]
rs202498	0.82[ASN][1000 genomes]
rs202499	0.82[ASN][1000 genomes]
rs202500	0.82[ASN][1000 genomes]
rs202501	0.82[ASN][1000 genomes]
rs202502	0.82[ASN][1000 genomes]
rs202503	0.82[ASN][1000 genomes]
rs202504	0.81[ASN][1000 genomes]
rs202505	0.82[ASN][1000 genomes]
rs202506	0.81[ASN][1000 genomes]
rs202511	0.82[ASN][1000 genomes]
rs202512	0.82[ASN][1000 genomes]
rs202513	0.82[ASN][1000 genomes]
rs202516	0.82[ASN][1000 genomes]
rs202517	0.82[ASN][1000 genomes]
rs202519	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912596	chr20:1486637-1877150	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1057036	chr20:1493425-1869281	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv912597	chr20:1500506-1877150	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv833894	chr20:1519433-1753366	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv531473	chr20:1532476-1864506	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv962538	chr20:1702183-1716952	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:1703400-1720200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:1712800-1719400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:1715000-1720000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr20:1715200-1719800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr20:1715400-1716600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr20:1715400-1719000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr20:1715400-1719800	Weak transcription	Primary T cells from cord blood	blood
8	chr20:1715600-1716800	Weak transcription	Brain Angular Gyrus	brain
9	chr20:1715600-1722400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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