Variant report

Variant	rs60448850
Chromosome Location	chr20:24084731-24084732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57816463	1.00[EUR][1000 genomes]
rs58712671	1.00[EUR][1000 genomes]
rs58987530	1.00[EUR][1000 genomes]
rs60160675	1.00[EUR][1000 genomes]
rs6036659	1.00[EUR][1000 genomes]
rs6049410	1.00[EUR][1000 genomes]
rs6114491	1.00[EUR][1000 genomes]
rs7264988	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7267009	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7271486	1.00[EUR][1000 genomes]
rs73334853	1.00[EUR][1000 genomes]
rs8119437	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9967925	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24079200-24085200	Enhancers	NHEK	skin
2	chr20:24082600-24088000	Enhancers	HUVEC	blood vessel
3	chr20:24082800-24085000	Enhancers	Osteobl	bone
4	chr20:24083000-24084800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr20:24083000-24085000	Enhancers	NH-A	brain
6	chr20:24083000-24085600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr20:24083200-24085200	Enhancers	Liver	Liver
8	chr20:24083400-24096200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr20:24083600-24086200	Weak transcription	HMEC	breast
10	chr20:24084000-24086600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr20:24084400-24086200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr20:24084400-24086200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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