Variant report

Variant	rs60452623
Chromosome Location	chr10:90311995-90311996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2209554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2209555	1.00[AMR][1000 genomes]
rs2209556	0.87[AMR][1000 genomes]
rs2225016	1.00[AMR][1000 genomes]
rs2861367	0.87[AMR][1000 genomes]
rs55834089	1.00[AMR][1000 genomes]
rs55854164	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56123244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56342787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58463359	0.87[AMR][1000 genomes]
rs58724830	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59043310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59337681	0.87[AMR][1000 genomes]
rs59438598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60089382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74147220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74147224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74147225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74147229	1.00[AMR][1000 genomes]
rs74147230	0.87[AMR][1000 genomes]
rs74147231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74147232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74147234	0.87[AMR][1000 genomes]
rs74147235	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv533167	chr10:90236197-90341481	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90303000-90314200	Weak transcription	Right Atrium	heart
2	chr10:90307000-90315200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:90310000-90312000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:90311600-90312000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:90311600-90312200	Enhancers	Fetal Lung	lung
6	chr10:90311600-90313400	Enhancers	Dnd41	blood
7	chr10:90311800-90312200	Enhancers	Fetal Thymus	thymus
8	chr10:90311800-90312200	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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