Variant report

Variant	rs60455437
Chromosome Location	chr11:57133289-57133290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:57127881..57130046-chr11:57132375..57135097,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs58425547	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57117600-57140000	Weak transcription	Right Atrium	heart
2	chr11:57127000-57133400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:57131200-57133400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:57131200-57134400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:57132000-57134000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:57132200-57133400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:57132200-57133600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr11:57132200-57133800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr11:57132200-57134000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:57132200-57134000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr11:57132200-57134200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr11:57132400-57133400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:57132400-57133400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr11:57132400-57133800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:57132400-57134000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr11:57132400-57134200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr11:57132400-57137600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr11:57132600-57133800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:57132600-57134400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:57132800-57135800	Weak transcription	Pancreas	Pancrea
21	chr11:57132800-57135800	Weak transcription	K562	blood

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