Variant report

Variant	rs60456228
Chromosome Location	chr12:117932564-117932565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11068516	0.88[ASN][1000 genomes]
rs16947644	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1045538	chr12:117929400-117963331	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117920800-117932800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:117925400-117933200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr12:117925600-117932600	Weak transcription	Pancreas	Pancrea
4	chr12:117925600-117933200	Weak transcription	Psoas Muscle	Psoas
5	chr12:117925600-117933200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr12:117925600-117933400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr12:117926000-117932800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:117932000-117934200	Enhancers	Liver	Liver
9	chr12:117932200-117932600	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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