Variant report

Variant	rs60457622
Chromosome Location	chr3:141549404-141549405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141455754..141459793-chr3:141546409..141549893,5	MCF-7	breast:
2	chr3:141543054..141544696-chr3:141548656..141551193,2	K562	blood:
3	chr3:141548195..141550715-chr3:141563735..141566666,2	K562	blood:

Variant related genes	Relation type
ENSG00000114125	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4586785	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141544800-141550800	Weak transcription	Right Atrium	heart
2	chr3:141547000-141550600	Enhancers	Hela-S3	cervix
3	chr3:141547200-141550000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:141547200-141550600	Enhancers	HMEC	breast
5	chr3:141548000-141550400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:141548000-141550800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:141548200-141549600	Weak transcription	K562	blood
8	chr3:141548200-141550400	Weak transcription	Esophagus	oesophagus
9	chr3:141548200-141550600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:141548200-141554600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:141548400-141549600	Weak transcription	HSMMtube	muscle
12	chr3:141548400-141550200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:141548400-141550400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:141548400-141550400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:141549000-141549600	Flanking Active TSS	NHEK	skin
16	chr3:141549000-141549800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:141549200-141549800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:141549400-141549800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:141549400-141549800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:141549400-141550600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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