Variant report

Variant	rs60459752
Chromosome Location	chr11:26338200-26338201
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57787586	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60041231	1.00[AMR][1000 genomes]
rs73441509	1.00[AMR][1000 genomes]
rs73441544	0.88[AFR][1000 genomes]
rs73441547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26337000-26340000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26337600-26338800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:26338000-26338400	Enhancers	Primary B cells from peripheral blood	blood
4	chr11:26338000-26338800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:26338200-26338800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr11:26338200-26338800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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