Variant report

Variant	rs60460344
Chromosome Location	chr6:133255765-133255766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11752149	1.00[ASN][1000 genomes]
rs17062020	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs56825762	1.00[ASN][1000 genomes]
rs58982527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60486041	0.91[AFR][1000 genomes]
rs73545954	1.00[ASN][1000 genomes]
rs73549819	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133252800-133256000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:133253600-133256600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:133253600-133258800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:133253800-133256000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:133253800-133258400	Weak transcription	Liver	Liver
6	chr6:133254200-133255800	Weak transcription	HSMM	muscle
7	chr6:133254400-133256400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:133254400-133256400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:133254400-133258800	Weak transcription	Fetal Kidney	kidney
10	chr6:133254600-133255800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:133254600-133258600	Weak transcription	Brain Substantia Nigra	brain
12	chr6:133254800-133256200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:133255000-133256400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:133255400-133256000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:133255400-133256200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:133255600-133256000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:133255600-133256000	Bivalent Enhancer	Osteobl	bone
18	chr6:133255600-133256400	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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