Variant report

Variant	rs604615
Chromosome Location	chr11:65474813-65474814
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65472457..65475716-chr11:65659486..65662901,4	K562	blood:
2	chr11:65474018..65475851-chr11:65483589..65486489,2	K562	blood:
3	chr11:65472429..65485450-chr11:65615794..65629774,38	K562	blood:
4	chr11:65474304..65478106-chr11:65478345..65481541,4	MCF-7	breast:
5	chr11:65473150..65475653-chr11:65659973..65662538,2	K562	blood:
6	chr11:65474484..65476042-chr11:65477819..65479417,2	K562	blood:
7	chr11:65473736..65477583-chr11:65477783..65481532,7	MCF-7	breast:
8	chr11:65474765..65476563-chr11:65487956..65489563,2	K562	blood:
9	chr11:65470573..65472493-chr11:65474244..65477241,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000172922	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000172977	Chromatin interaction
ENSG00000172757	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11227270	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17491607	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4645915	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4645932	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs559064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs605952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs617980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72939192	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72939200	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72941004	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72941018	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72941051	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs732072	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897716	chr11:65083491-65481166	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	999 gene(s)	inside rSNPs	diseases
2	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
3	nsv897723	chr11:65294830-65481166	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv897735	chr11:65335705-65481166	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
5	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
6	nsv897747	chr11:65353906-65481166	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
7	nsv897755	chr11:65405300-65481166	Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
8	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65468200-65478600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:65473800-65475000	Enhancers	Fetal Muscle Leg	muscle
3	chr11:65473800-65475000	Enhancers	Fetal Thymus	thymus
4	chr11:65474200-65476800	Weak transcription	K562	blood
5	chr11:65474200-65477200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:65474200-65478000	Weak transcription	Dnd41	blood
7	chr11:65474200-65478400	Weak transcription	Colonic Mucosa	Colon
8	chr11:65474200-65478400	Weak transcription	Fetal Brain Female	brain
9	chr11:65474200-65478400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:65474200-65478600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr11:65474200-65478600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:65474200-65478600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr11:65474200-65478600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr11:65474200-65478600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:65474200-65478600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr11:65474200-65478600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:65474200-65478600	Weak transcription	Adipose Nuclei	Adipose
18	chr11:65474200-65478600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:65474200-65478600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr11:65474200-65478600	Weak transcription	GM12878-XiMat	blood
21	chr11:65474400-65477800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:65474400-65478400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:65474400-65478600	Weak transcription	Primary B cells from cord blood	blood
24	chr11:65474400-65478600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr11:65474400-65478600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:65474400-65478600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr11:65474400-65478600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr11:65474400-65478600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:65474800-65478800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links