Variant report

Variant	rs60465125
Chromosome Location	chr12:29891087-29891088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:29890291..29892442-chr12:29896713..29898874,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10843454	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11050400	0.86[EUR][1000 genomes]
rs11050417	0.92[ASN][1000 genomes]
rs11050418	1.00[ASN][1000 genomes]
rs11050425	1.00[AMR][1000 genomes]
rs12227932	0.86[EUR][1000 genomes]
rs2054438	0.93[ASN][1000 genomes]
rs2126891	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529328	chr12:29692414-30246209	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv528476	chr12:29884553-29895535	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29855800-29891200	Weak transcription	NHLF	lung
2	chr12:29863400-29895800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:29875400-29891600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:29879400-29891600	Weak transcription	NHDF-Ad	bronchial
5	chr12:29879600-29892000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr12:29879600-29894000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr12:29879800-29896800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:29880000-29921200	Weak transcription	Fetal Kidney	kidney
9	chr12:29880200-29895800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr12:29881000-29895600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr12:29881600-29915800	Weak transcription	Brain Substantia Nigra	brain
12	chr12:29884400-29891600	Weak transcription	HSMMtube	muscle
13	chr12:29885600-29895800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:29885800-29894200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr12:29886200-29891400	Weak transcription	NH-A	brain
16	chr12:29886400-29891200	Weak transcription	Osteobl	bone
17	chr12:29886400-29893600	Weak transcription	Hela-S3	cervix
18	chr12:29886400-29894400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr12:29886600-29891600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr12:29886800-29895800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr12:29887400-29902000	Weak transcription	Brain Anterior Caudate	brain
22	chr12:29887400-29915600	Weak transcription	Brain Angular Gyrus	brain
23	chr12:29888200-29892000	Weak transcription	Aorta	Aorta
24	chr12:29888200-29894800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr12:29888400-29892200	Weak transcription	HMEC	breast
26	chr12:29888400-29901200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr12:29888800-29892000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr12:29888800-29894200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr12:29888800-29915600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr12:29889000-29892200	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr12:29889000-29895800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr12:29889200-29892000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr12:29889200-29892600	Enhancers	Fetal Muscle Leg	muscle
34	chr12:29889200-29894200	Weak transcription	NHEK	skin
35	chr12:29889200-29903200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr12:29889400-29892000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr12:29889400-29896800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr12:29889800-29891400	Enhancers	Fetal Stomach	stomach
39	chr12:29889800-29892800	Enhancers	Fetal Heart	heart
40	chr12:29890000-29892200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr12:29890000-29892600	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr12:29890000-29896200	Weak transcription	Fetal Brain Male	brain
43	chr12:29890200-29904200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr12:29890200-29915600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr12:29890600-29892000	Enhancers	Adipose Nuclei	Adipose
46	chr12:29890600-29892200	Enhancers	Colon Smooth Muscle	Colon
47	chr12:29890600-29892200	Enhancers	Fetal Lung	lung
48	chr12:29890600-29892600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr12:29890600-29892800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr12:29890600-29913000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links