Variant report
| Variant | rs60466347 |
|---|---|
| Chromosome Location | chr12:30461850-30461851 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOXM1 | chr12:30460770-30461888 | ECC-1 | luminal epithelium: | n/a | n/a |
| 2 | MAX | chr12:30461011-30461934 | ECC-1 | luminal epithelium: | n/a | n/a |
| 3 | TCF12 | chr12:30460853-30462003 | ECC-1 | luminal epithelium: | n/a | n/a |
| 4 | EP300 | chr12:30460764-30461936 | ECC-1 | luminal epithelium: | n/a | n/a |
| 5 | RAD21 | chr12:30461211-30461868 | ECC-1 | luminal epithelium: | n/a | n/a |
| 6 | NFIC | chr12:30460884-30461881 | ECC-1 | luminal epithelium: | n/a | n/a |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RNA5SP356 | TF binding region |
| ENSG00000251781 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:3)
| rs_ID | r2[population] |
|---|---|
| rs11614412 | 1.00[AFR][1000 genomes] |
| rs58851096 | 1.00[AFR][1000 genomes] |
| rs60821885 | 0.87[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832360 | chr12:30393329-30555693 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv517916 | chr12:30454845-30485611 | Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv3343291 | chr12:30455597-30992837 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
| 4 | nsv8937 | chr12:30457162-30462498 | Enhancers ZNF genes & repeats Weak transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
