Variant report

Variant	rs60468401
Chromosome Location	chr13:63237890-63237891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55930794	1.00[AFR][1000 genomes]
rs57596584	1.00[AFR][1000 genomes]
rs59091564	1.00[AFR][1000 genomes]
rs60691111	1.00[AFR][1000 genomes]
rs60902655	1.00[AFR][1000 genomes]
rs74082743	1.00[AFR][1000 genomes]
rs74082744	1.00[AFR][1000 genomes]
rs74082745	1.00[AFR][1000 genomes]
rs74082746	1.00[AFR][1000 genomes]
rs74082747	1.00[AFR][1000 genomes]
rs74082750	1.00[AFR][1000 genomes]
rs74082752	1.00[AFR][1000 genomes]
rs74085307	0.91[AFR][1000 genomes]
rs74085308	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038992	chr13:62827929-63369497	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541795	chr13:62827929-63369497	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1038215	chr13:62836702-63405446	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1049118	chr13:63121815-63351196	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv900260	chr13:63172810-63277176	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900261	chr13:63179285-63553876	Enhancers ZNF genes & repeats Active TSS Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv900262	chr13:63197837-63252427	Active TSS ZNF genes & repeats Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
8	nsv900263	chr13:63197837-63277176	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
9	nsv900264	chr13:63197837-63296881	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
10	esv2758329	chr13:63199237-63622979	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2759940	chr13:63199237-63721248	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv900265	chr13:63206067-63259033	Active TSS Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases
13	nsv900266	chr13:63206067-63277176	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
14	nsv455906	chr13:63214443-63263920	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
15	nsv561896	chr13:63214443-63263920	Active TSS Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases
16	nsv900267	chr13:63220886-63277176	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
17	esv2753514	chr13:63221699-63959299	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv455907	chr13:63229879-63259033	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
19	nsv561897	chr13:63229879-63259033	Enhancers Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases
20	nsv900268	chr13:63229879-63277176	Enhancers Active TSS Flanking Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases
21	nsv900269	chr13:63229879-63280874	Weak transcription Enhancers Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
22	nsv900270	chr13:63229879-63347522	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:63236800-63238000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr13:63237200-63238000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr13:63237600-63238600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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