Variant report

Variant	rs60468709
Chromosome Location	chr3:156301050-156301051
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55885287	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55934657	0.85[AMR][1000 genomes]
rs73875722	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877684	chr3:156294987-156344825	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156295400-156305200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:156297600-156301600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:156297800-156305000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:156298000-156301400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:156300000-156301400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:156300200-156302000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:156300200-156302600	Enhancers	K562	blood
8	chr3:156300200-156303600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:156300400-156302000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:156300400-156302600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr3:156300600-156302200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr3:156300800-156302000	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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