Variant report

Variant	rs60473134
Chromosome Location	chr2:30580712-30580713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10195381	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11888816	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11891295	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13004173	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34115418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34540361	0.90[ASN][1000 genomes]
rs34689327	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34737435	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35857367	0.90[ASN][1000 genomes]
rs56778022	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6722899	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv833648	chr2:30505882-30696275	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30570000-30582800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr2:30570200-30581800	Weak transcription	Ovary	ovary
3	chr2:30570200-30584800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:30571000-30581800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr2:30571600-30582000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:30574800-30582400	Weak transcription	Spleen	Spleen
7	chr2:30574800-30583600	Weak transcription	Aorta	Aorta
8	chr2:30576200-30582600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr2:30577600-30581200	Weak transcription	Fetal Thymus	thymus
10	chr2:30577800-30581400	Weak transcription	Right Atrium	heart
11	chr2:30578000-30581800	Weak transcription	Pancreas	Pancrea
12	chr2:30578000-30581800	Weak transcription	NHDF-Ad	bronchial
13	chr2:30578600-30582200	Weak transcription	NHLF	lung
14	chr2:30578800-30581600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:30579200-30581600	Enhancers	Fetal Heart	heart
16	chr2:30579400-30581400	Weak transcription	Right Ventricle	heart
17	chr2:30579400-30581600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:30579400-30582000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:30579800-30581400	Weak transcription	Left Ventricle	heart
20	chr2:30579800-30581800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr2:30579800-30584200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:30579800-30584600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:30580600-30581400	Weak transcription	Placenta	Placenta
24	chr2:30580600-30582000	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links