Variant report

Variant	rs6047727
Chromosome Location	chr20:21897218-21897219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1007169	0.82[AMR][1000 genomes]
rs11699227	0.83[AMR][1000 genomes]
rs169311	0.82[AMR][1000 genomes]
rs1884588	0.81[AMR][1000 genomes]
rs1884589	0.85[AMR][1000 genomes]
rs1884590	0.85[AMR][1000 genomes]
rs1884595	0.88[AMR][1000 genomes]
rs1980571	0.88[AMR][1000 genomes]
rs2208054	0.82[AMR][1000 genomes]
rs2208055	0.88[AMR][1000 genomes]
rs2281526	0.82[AMR][1000 genomes]
rs3818179	0.88[AMR][1000 genomes]
rs3818180	0.88[AMR][1000 genomes]
rs3818183	0.88[AMR][1000 genomes]
rs4390829	0.88[AMR][1000 genomes]
rs6035988	0.88[AMR][1000 genomes]
rs6047714	0.88[AMR][1000 genomes]
rs6047715	0.88[AMR][1000 genomes]
rs6047728	0.88[AMR][1000 genomes]
rs6047729	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6047730	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6047731	0.88[AMR][1000 genomes]
rs6047732	0.88[AMR][1000 genomes]
rs6047733	0.88[AMR][1000 genomes]
rs6047749	0.82[AMR][1000 genomes]
rs6082556	0.88[AMR][1000 genomes]
rs6082560	0.83[AMR][1000 genomes]
rs6113418	0.88[AMR][1000 genomes]
rs6113424	0.88[AMR][1000 genomes]
rs6113425	0.88[AMR][1000 genomes]
rs6113431	0.84[AMR][1000 genomes]
rs6137476	0.82[AMR][1000 genomes]
rs927059	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv912814	chr20:21703615-21946928	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv585714	chr20:21863397-21918447	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	n/a
4	nsv1061217	chr20:21875728-21906483	Weak transcription Enhancers ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	n/a
5	nsv912815	chr20:21884693-21953649	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:21897000-21897400	Active TSS	H9 Cell Line	embryonic stem cell
2	chr20:21897000-21897400	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr20:21897200-21897600	Active TSS	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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