Variant report

Variant	rs6048265
Chromosome Location	chr20:22676324-22676325
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1011104	1.00[EUR][1000 genomes]
rs11907127	1.00[EUR][1000 genomes]
rs1999861	1.00[EUR][1000 genomes]
rs57880938	1.00[EUR][1000 genomes]
rs58191632	1.00[EUR][1000 genomes]
rs59162037	1.00[EUR][1000 genomes]
rs6036174	1.00[EUR][1000 genomes]
rs6048248	1.00[EUR][1000 genomes]
rs6048250	1.00[EUR][1000 genomes]
rs6048256	1.00[EUR][1000 genomes]
rs6113765	1.00[EUR][1000 genomes]
rs61733821	1.00[EUR][1000 genomes]
rs72470562	1.00[EUR][1000 genomes]
rs73306740	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833943	chr20:22657016-22703454	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22672800-22680400	Weak transcription	Fetal Heart	heart
2	chr20:22673000-22680600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr20:22673200-22678600	Weak transcription	HUVEC	blood vessel
4	chr20:22675000-22676400	Enhancers	HSMMtube	muscle
5	chr20:22675400-22676600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr20:22675800-22676600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr20:22676200-22679200	Weak transcription	Right Atrium	heart
8	chr20:22676200-22679800	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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